This package aims to develop computational methods for region-based analyses of multiplexed single-cell data.
Download the repository and run the following commands:
pip install -r requirements.txt
pip install .
See https://semenovlab.github.io/SpatialCells/ for detailed documentation and tutorials.
Please cite our paper if you use this package or code in your own work:
@InProceedings{spatialcells_2023,
author="Wan, Guihong and Maliga, Zoltan and Yan, Boshen
and Vallius, Tuulia and Shi, Yingxiao and Khattab, Sara
and Chang, Crystal and Nirmal, Ajit J. and Yu, Kun-Hsing
and Liu David Liu and Lian, Christine G. and DeSimone, Mia S.
and Sorger, Peter K. and Semenov, Yevgeniy R.",
title="SpatialCells: Automated Profiling of Tumor Microenvironments with Spatially Resolved Multiplexed Single-Cell Data",
year="2023"
}
This work has been supported by the following NIH/NCI grant K99CA286966.
Please contact guihong.wan@outlook.com in case you have any questions.