Clone or download this repository, open a command prompt inside it and run:
mkdir env
python -m venv env
source env/bin/activate
pip install -r requirements.txt
Windows or Anaconda users may need to adapt the commands.
When using Anaconda in Windows, the script pyama_squares.cmd may be used to open a command window with the alias pyama_squares defined.
In this case, you may need to adjust the script to match your Anaconda installation path.
*.pickle file exported using PyAMA’s “Pickle maximum bounding box” command
numpy file suitable for import in PyAMA as segmentation/binary stack
See python pyama_squares.py -h for more information.