pylibseq-anator

Calculate windowed population genetics summary statistics easily using a CLI wrapper for pylibseq.

Features

• Windowed calculation of population genetics statistics
• Configurable window sizes and overlap
• Filter callable sites with a bed file
• Command line options to pick what stats you would like

Command Line Interface

pylibseq-anator --input data.vcf --window-size 1000 --start 1 --stop 10000 --stats pi --output results.csv

License

This project is licensed under the MIT License - see the LICENSE file for details.