adding gotree version 0.5.1

[erinyoung]

I'd like to add a gotree image to this effort.

gotree is a simply tree manipulator that helps with workflows.

It even has commandline visualizations

 gotree reroot midpoint -i iqtree.treefile.nwk | gotree draw text
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Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[kapsakcj]

Is it expected or normal to see NaN in the test output showing the tree stats? The tests look like they passed, but thought I'd ask since I'm unfamiliar with this tool

#11 [test 4/4] RUN gotree generate uniformtree -l 100 -n 10 | gotree stats
#11 0.256 tree  nodes   tips    edges   meanbrlen       sumbrlen        meansupport     mediansupport   rooted  nbcherries      colless sackin
#11 0.259 0     198     100     197     0.10513674      20.71193870     NaN     NaN     unrooted        26      -       -
#11 0.260 1     198     100     197     0.09829449      19.36401391     NaN     NaN     unrooted        31      -       -
#11 0.261 2     198     100     197     0.09590848      18.89397023     NaN     NaN     unrooted        27      -       -
#11 0.264 3     198     100     197     0.10744472      21.16660992     NaN     NaN     unrooted        23      -       -
#11 0.265 4     198     100     197     0.10560810      20.80479585     NaN     NaN     unrooted        30      -       -
#11 0.265 5     198     100     197     0.09216359      18.15622639     NaN     NaN     unrooted        22      -       -
#11 0.267 6     198     100     197     0.09335302      18.39054399     NaN     NaN     unrooted        25      -       -
#11 0.268 7     198     100     197     0.09944785      19.59122734     NaN     NaN     unrooted        24      -       -
#11 0.270 8     198     100     197     0.08563558      16.87020922     NaN     NaN     unrooted        24      -       -
#11 0.271 9     198     100     197     0.10414921      20.51739522     NaN     NaN     unrooted        26      -       -
#11 DONE 0.3s

[erinyoung]

Is it expected or normal to see NaN in the test output showing the tree stats? The tests look like they passed, but thought I'd ask since I'm unfamiliar with this tool

#11 [test 4/4] RUN gotree generate uniformtree -l 100 -n 10 | gotree stats
#11 0.256 tree  nodes   tips    edges   meanbrlen       sumbrlen        meansupport     mediansupport   rooted  nbcherries      colless sackin
#11 0.259 0     198     100     197     0.10513674      20.71193870     NaN     NaN     unrooted        26      -       -
#11 0.260 1     198     100     197     0.09829449      19.36401391     NaN     NaN     unrooted        31      -       -
#11 0.261 2     198     100     197     0.09590848      18.89397023     NaN     NaN     unrooted        27      -       -
#11 0.264 3     198     100     197     0.10744472      21.16660992     NaN     NaN     unrooted        23      -       -
#11 0.265 4     198     100     197     0.10560810      20.80479585     NaN     NaN     unrooted        30      -       -
#11 0.265 5     198     100     197     0.09216359      18.15622639     NaN     NaN     unrooted        22      -       -
#11 0.267 6     198     100     197     0.09335302      18.39054399     NaN     NaN     unrooted        25      -       -
#11 0.268 7     198     100     197     0.09944785      19.59122734     NaN     NaN     unrooted        24      -       -
#11 0.270 8     198     100     197     0.08563558      16.87020922     NaN     NaN     unrooted        24      -       -
#11 0.271 9     198     100     197     0.10414921      20.51739522     NaN     NaN     unrooted        26      -       -
#11 DONE 0.3s

The command gotree generate uniformtree -l 100 -n 10 generates an unrooted tree. Most of the stats require the tree to be rooted, and are NaN otherwise.

[kapsakcj]

Thanks for making that change! Merging and deploying now

[kapsakcj]

Deploy workflow here: https://github.com/StaPH-B/docker-builds/actions/runs/21954985423

Since this is a new tool (new to this repo), just want to remind myself to set the new quay docker image repo to public since it defaults to private