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erinyoung
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Feb 13, 2026
| perl-types-serialiser 1.01 pl5321hdfd78af_0 bioconda | ||
| pip 25.2 pyh8b19718_0 conda-forge | ||
| pixman 0.46.4 h54a6638_1 conda-forge | ||
| plassembler 1.8.1 pyhdfd78af_0 bioconda |
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This looks like the dependency list for 1.8.1.
Can you run
micromamba list -n base
inside the container to get an up-to-date list of dependencies and their versions?
Contributor
|
Tests looked like they worked |
Contributor
|
I added another file to your PR due to updating the workflow for a github action (GA). Plassembler uses third-party databases, so we have a GA that updates the latest plassembler image semi-frequently. It should not impact the main image in this PR. |
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Pull Request (PR) checklist:
docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15)docker-builds/build-files/spades/3.12.0/Dockerfile)build-files/shigatyper/2.0.1/test.sh)docker-builds/build-files/spades/3.12.0/README.md)Description
Updated plassembler to 1.8.2 version from 1.8.1
Diff output
Test output
=> [test 1/4] WORKDIR /test 0.0s
=> [test 2/4] RUN plassembler --help && plassembler --version 1.8s
=> [test 3/4] RUN wget https://github.com/gbouras13/plassembler/archive/refs/tags/v1.8.2.tar.gz && tar -xvf v1.8.2.tar.gz && plassembler run -l plassembler 176.5s
=> [test 4/4] RUN micromamba list -n base