Skip to content

Conversation

@tonywu1999
Copy link
Contributor

@tonywu1999 tonywu1999 commented May 20, 2025

Motivation and Context

Metamorpheus has a new feature where they enable proper qvalue filtering when turning on MBR.
See this link and a description of their columns and this paper for context.

We can now have the Metamorpheus converter filter based on qvalues if we want.

Changes

  • Enable qvalue filtering for peaks detected via MBR
  • Remove decoy peptides / decoy peaks

Testing

Checklist Before Requesting a Review

  • I have read the MSstats contributing guidelines
  • My changes generate no new warnings
  • Any dependent changes have been merged and published in downstream modules

@tonywu1999 tonywu1999 merged commit ee9286c into devel Jun 4, 2025
1 check passed
@tonywu1999 tonywu1999 deleted the metamorpheus-update branch June 4, 2025 21:26
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants