Multimodal adding datasets for the GMM for BA9#2
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lesolorzanov wants to merge 6 commits intoadaly:multimodalfrom
Open
Multimodal adding datasets for the GMM for BA9#2lesolorzanov wants to merge 6 commits intoadaly:multimodalfrom
lesolorzanov wants to merge 6 commits intoadaly:multimodalfrom
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add a dataset "ImageAnnDataset" to bring only images and no counts at all.
Adding MMFeatureGridDataset which is needed for the count logits coming from scBERT plus the UNI features to which f_img will be applied to do the final g_mm
to have gene_symbols as kwarg in preprocess to ask for a column name in adata.var storing gene_symbols matching target_genes
using glob instead of a hardcoded locations to find spaceranger files
adding the glob library missing in utils
added parameters atonce_count_limit=None, device="cpu", delay_sending_to_device=True, to GridNetHexMM on the hopes of delaying sending ton GPU when the counts and images are full size. Recently, f_count is the logits and f_img is a 1024 vector of UNI instead of the image itself.
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Adding the necessary datasets for the BA9 models