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1. Preliminary-CpG-Data-Analysis Preliminary-CpG-Data-Analysis Public

   PacBio Jasmine pipeline, penalized regression, and DMR identification

   Shell 2

2. RPKM RPKM Public

   Creation of a gene expression atlas in strawberry

   Shell 1 1

3. NLR-Identification NLR-Identification Public

   Identification of nlr loci with NLR_Annotator, plus analyses and visualization

   Shell 1

4. WGS-Variant-Library WGS-Variant-Library Public

   calling variants from publicly available strawberry WGS data in order to screen for potentially deleterious mutations in genes of interest

   Shell

5. HRP-Pipeline HRP-Pipeline Public

   My documentation for running the full-length homology-based r gene prediction pipeline, complete with scripts. Fills in gaps of the official pipeline.

   Shell

6. Depth-Over-CDS Depth-Over-CDS Public

   Workflow to visualize read depth over the coding sequence of a gene

   Shell