Add Windows build to CI

.github/workflows/build_wheels.yaml

@@ -6,12 +6,12 @@ on:
   workflow_dispatch:
 
 jobs:
-  macos:
-    name: Build macOS
-    runs-on: macos-latest
+  windows:
+    name: Build Windows
+    runs-on: windows-latest
     strategy:
       matrix:
-        python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ]
+        python-version: [ '3.10' ] # TODO: Restore!
     steps:
     - name: Checkout
       uses: actions/checkout@v3
@@ -25,12 +25,11 @@ jobs:
       uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Build wheels (x86_64)
-      uses: messense/maturin-action@v1
+
+    - name: Build wheels
+      uses: PyO3/maturin-action@v1
       with:
-        target: x86_64
-        maturin-version: v0.10.6
-        args: --interpreter python${{ matrix.python-version }} --release --out dist
+        args: -i python --release --out dist
     - name: Install built wheel (x86_64)
       run: |
         pip install pycoverm --no-index --find-links dist --force-reinstall --no-dependencies
@@ -41,44 +40,79 @@ jobs:
         name: wheels
         path: dist
 
-  linux:
-    name: Build Linux
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ]
-    steps:
-    - uses: actions/checkout@v3
-    - uses: actions/setup-python@v4
-      with:
-        python-version: ${{ matrix.python-version }}
-        architecture: x64
-    - name: Build Wheels
-      uses: messense/maturin-action@v1
-      with:
-        target: x86_64
-        maturin-version: v0.10.6
-        manylinux: auto
-        args: --interpreter python${{ matrix.python-version }} --release --out dist
-        before-script-linux: |
-          # If we're running on rhel centos, install needed packages.
-          if command -v yum &> /dev/null; then
-              yum update -y && yum install -y perl-core openssl openssl-devel pkgconfig libatomic
-              # If we're running on i686 we need to symlink libatomic
-              # in order to build openssl with -latomic flag.
-              if [[ ! -d "/usr/lib64" ]]; then
-                  ln -s /usr/lib/libatomic.so.1 /usr/lib/libatomic.so
-              fi
-          else
-              # If we're running on debian-based system.
-              apt update -y && apt-get install -y libssl-dev openssl pkg-config
-          fi
-    - name: Install built wheel
-      run: |
-        pip install pycoverm --no-index --find-links dist --force-reinstall --no-dependencies
-        python -c "import pycoverm"
-    - name: Upload wheels
-      uses: actions/upload-artifact@v2
-      with:
-        name: wheels
-        path: dist
+#   macos:
+#     name: Build macOS
+#     runs-on: macos-latest
+#     strategy:
+#       matrix:
+#         python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ]
+#     steps:
+#     - name: Checkout
+#       uses: actions/checkout@v3
+#     - name: rust-toolchain
+#       uses: actions-rs/toolchain@v1.0.6
+#       with:
+#         profile: minimal
+#         toolchain: stable
+#         default: true
+#     - name: Setup Python ${{ matrix.python-version }} environment
+#       uses: actions/setup-python@v4
+#       with:
+#         python-version: ${{ matrix.python-version }}
+#     - name: Build wheels (x86_64)
+#       uses: messense/maturin-action@v1
+#       with:
+#         target: x86_64
+#         maturin-version: v0.10.6
+#         args: --interpreter python${{ matrix.python-version }} --release --out dist
+#     - name: Install built wheel (x86_64)
+#       run: |
+#         pip install pycoverm --no-index --find-links dist --force-reinstall --no-dependencies
+#         python -c "import pycoverm"
+#     - name: Upload wheels
+#       uses: actions/upload-artifact@v2
+#       with:
+#         name: wheels
+#         path: dist
+# 
+#   linux:
+#     name: Build Linux
+#     runs-on: ubuntu-latest
+#     strategy:
+#       matrix:
+#         python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ]
+#     steps:
+#     - uses: actions/checkout@v3
+#     - uses: actions/setup-python@v4
+#       with:
+#         python-version: ${{ matrix.python-version }}
+#         architecture: x64
+#     - name: Build Wheels
+#       uses: messense/maturin-action@v1
+#       with:
+#         target: x86_64
+#         maturin-version: v0.10.6
+#         manylinux: auto
+#         args: --interpreter python${{ matrix.python-version }} --release --out dist
+#         before-script-linux: |
+#           # If we're running on rhel centos, install needed packages.
+#           if command -v yum &> /dev/null; then
+#               yum update -y && yum install -y perl-core openssl openssl-devel pkgconfig libatomic
+#               # If we're running on i686 we need to symlink libatomic
+#               # in order to build openssl with -latomic flag.
+#               if [[ ! -d "/usr/lib64" ]]; then
+#                   ln -s /usr/lib/libatomic.so.1 /usr/lib/libatomic.so
+#               fi
+#           else
+#               # If we're running on debian-based system.
+#               apt update -y && apt-get install -y libssl-dev openssl pkg-config
+#           fi
+#     - name: Install built wheel
+#       run: |
+#         pip install pycoverm --no-index --find-links dist --force-reinstall --no-dependencies
+#         python -c "import pycoverm"
+#     - name: Upload wheels
+#       uses: actions/upload-artifact@v2
+#       with:
+#         name: wheels
+#         path: dist

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "pycoverm"
-version = "0.6.0"
+version = "0.6.1"
 authors = ["Antonio Camargo <antoniop.camargo@gmail.com>"]
 edition = "2021"
 readme = "README.md"
@@ -17,3 +17,4 @@ ndarray = "0.15.6"
 numpy = "0.20.0"
 pyo3 = { version = "0.20", features = ["extension-module"] }
 rust-htslib = "0.45.0"
+openssl = { version = "0.10", features = ["vendored"] }