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Adding event logger for patch simulations

category: simRelated to the sim subpackagesRelated to the sim subpackages

package: patchRelated to the patch implementationRelated to the patch implementation

priority: mediumNon-urgent but important taskNon-urgent but important task

size: mediumEstimated size of issue or PR is mediumEstimated size of issue or PR is medium

type: featureImprovement or additions to the code baseImprovement or additions to the code base

Status: Open.

#191 In bagherilab/ARCADE;

· allison-li-1016 opened on Jun 17, 2025

Add command flags for suppressing outputs. e.g. CELLS or LOCATIONS, for larger file sizes when they are not necessary.

package: coreRelated to the core packageRelated to the core package

Status: Open.

Enhancement

#186 In bagherilab/ARCADE;

· cainja opened on May 29, 2025

Improve input handling for out of bounds or invalid parameters

Status: Open.

#185 In bagherilab/ARCADE;

· cainja opened on May 28, 2025

Add initial condition tag for parameter

package: coreRelated to the core packageRelated to the core package

Status: Open.

Task

#177 In bagherilab/ARCADE;

· pohaoc2 opened on Apr 28, 2025

Parallelize the CPM algorithm

package: pottsRelated to the potts implementationRelated to the potts implementation

priority: lowShould be fixed if time permits but can be postponedShould be fixed if time permits but can be postponed

Status: Open.

#170 In bagherilab/ARCADE;

· cainja opened on Apr 3, 2025

Overhead for CARCADE Merge into V3

Status: Open.

#169 In bagherilab/ARCADE;

· allison-li-1016 opened on Mar 31, 2025

Make class-specific Parameters XML files

priority: mediumNon-urgent but important taskNon-urgent but important task

size: mediumEstimated size of issue or PR is mediumEstimated size of issue or PR is medium

type: featureImprovement or additions to the code baseImprovement or additions to the code base

Status: Open.

Enhancement

#156 In bagherilab/ARCADE;

· Jannetty opened on Feb 20, 2025

Reorganize the util package

category: utilRelated to the util subpackagesRelated to the util subpackages

Status: Open.

#149 In bagherilab/ARCADE;

· jessicasyu opened on Feb 4, 2025

Make division offset along plane's normal vector instead of offestfrom edge of cell

category: envRelated to the env subpackagesRelated to the env subpackages

package: pottsRelated to the potts implementationRelated to the potts implementation

priority: mediumNon-urgent but important taskNon-urgent but important task

size: mediumEstimated size of issue or PR is mediumEstimated size of issue or PR is medium

type: featureImprovement or additions to the code baseImprovement or additions to the code base

Status: Open.

Enhancement

#137 In bagherilab/ARCADE;

· Jannetty opened on Jan 7, 2025

Refactor Graph class in core-utils subpackage

category: utilRelated to the util subpackagesRelated to the util subpackages

package: coreRelated to the core packageRelated to the core package

Status: Open.

Task

#133 In bagherilab/ARCADE;

· cainja opened on Dec 17, 2024

Add documentation for installation and usage

type: docsImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#130 In bagherilab/ARCADE;

· jessicasyu opened on Dec 13, 2024

Update Docker image to support patch simulations

priority: mediumNon-urgent but important taskNon-urgent but important task

size: mediumEstimated size of issue or PR is mediumEstimated size of issue or PR is medium

type: featureImprovement or additions to the code baseImprovement or additions to the code base

Status: Open.

#128 In bagherilab/ARCADE;

· jessicasyu opened on Dec 12, 2024