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add more mutation QCs

Status: Open.

#406 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 21, 2025

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Phase 2

Fix bug in applyomegaqc plots

Status: Open.

Bug

#403 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 19, 2025

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Phase 2

fix nextflow warnings

Status: Open.

#402 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 17, 2025

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Phase 2

report exon number with intervals of protein coordinates

Status: Open.

#399 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 9, 2025

add computation of mutation density at whole-genome level

Status: Open.

#398 In bbglab/deepCSA;

· FerriolCalvet opened on Dec 4, 2025

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Phase 2

Customize annotation of specific mutations

Status: Open.

#395 In bbglab/deepCSA;

· FerriolCalvet opened on Nov 24, 2025

Plot selection with any available data

Status: Open.

#392 In bbglab/deepCSA;

· FerriolCalvet opened on Nov 18, 2025

Add VAF vs depth plots

Status: Open.

#391 In bbglab/deepCSA;

· FerriolCalvet opened on Nov 17, 2025

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Phase 2

Compute mutation densities for subgenic regions

Status: Open.

#388 In bbglab/deepCSA;

· FerriolCalvet opened on Nov 12, 2025

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Phase 2

Feature request: Take a subset of samples for a specific set of features

Status: Open.

#376 In bbglab/deepCSA;

· bkohrn opened on Oct 3, 2025

Add validation with pandera

Status: Open.

#372 In bbglab/deepCSA;

· FerriolCalvet opened on Sep 18, 2025

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Phase 2

Reimplement panel creation and manipulation with PyRanges

Status: Open.

#371 In bbglab/deepCSA;

· FerriolCalvet opened on Sep 18, 2025

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Phase 2