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Cannot find "wholegenome" commond in MGEfinder.

Status: Open.

#58 In bhattlab/MGEfinder;

· Hongda-Zhao opened on Nov 10, 2025

Cannot solve conda environment

Status: Open.

#57 In bhattlab/MGEfinder;

· hgrandjean opened on Apr 23, 2025

Running MGEfinder on contigs and not finding known IS element

Status: Open.

#56 In bhattlab/MGEfinder;

· Jigyasa3 opened on Apr 8, 2025

MGE finder fails to produce output

Status: Open.

#55 In bhattlab/MGEfinder;

· Fla1487 opened on Dec 5, 2024

is there any MGE annotation in the output/results files

Status: Open.

#54 In bhattlab/MGEfinder;

· patience111 opened on Nov 24, 2024

non-zero exit status 255 Error on Mac while running mgefinder

Status: Open.

#53 In bhattlab/MGEfinder;

· chandanabasak opened on Aug 2, 2024

Why was test_workdir/00.genome/efae_GCF_900639545.fna chosen as the reference genome?

Status: Open.

#52 In bhattlab/MGEfinder;

· jiejiemao opened on Jul 3, 2024

Hello there i'm trying to run a test on Non-toxin CD 's MGE, but i encounter an error which i can't slove

Status: Open.

#51 In bhattlab/MGEfinder;

· CDI-PMCC opened on May 11, 2024

unable to install using install.sh script - package dependencies not available?

Status: Open.

#50 In bhattlab/MGEfinder;

· mafuller opened on Apr 19, 2024

unable to run test data

Status: Open.

#46 In bhattlab/MGEfinder;

· narib opened on May 12, 2023

No Output File

Status: Open.

#43 In bhattlab/MGEfinder;

· REMOUS-MAX opened on Nov 24, 2022