Biocentral API

API packages for easy access to the functionality of the biocentral ecosystem.

Supported languages

• ✅ Python
• ✅ Dart

Main Features

• Embedding: Embed protein sequences into a vector space using a protein language model.
• Predict: Predict protein properties using pre-defined prediction models.
• Train: Train your own custom prediction models (using biotrainer)
• Inference: Run inference on new data using your own custom prediction models.

Citation

If you find the biocentral API useful in your research, please cite our paper:

@Article{Franz2025,
  author    = {Franz, Sebastian and Olenyi, Tobias and Schloetermann, Paula and Smaoui, Amine and Jimenez Soto, Luisa Fernanda and Rost, Burkhard},
  title     = {biocentral: embedding-based protein predictions},
  year      = {2025},
  month     = nov,
  doi       = {10.1101/2025.11.21.689449},
  publisher = {Cold Spring Harbor Laboratory},
}