biocentral_server

Compute functionality for biocentral. Provided via a dockerized FastAPI server.

Features and modules

These are the currently provided modules:

Module	Features	External Dependencies
embeddings	Embed protein sequences	biotrainer
ppi	Work with protein-protein interactions	hvi_toolkit
predict	Create predictions from pre-trained models	TMbed, VespaG
custom_models	Train and evaluate models trained on embeddings	biotrainer
proteins	Work with protein data	taxoniq
plm_eval	Automatically evaluate protein language models	biotrainer, PBC

Installing and running

See the docs on how to get started with biocentral_server.

For development, see the development guide.

Citation

Please cite the biocentral main repository if you are using biocentral_server in your scientific publication:

@Online{biocentral,
  accessed = {2024-09-10},
  author   = {Biocentral contributors},
  title    = {Biocentral - An open source bioinformatics application},
  url      = {https://github.com/biocentral/biocentral},
}