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3 changes: 3 additions & 0 deletions .codespellrc
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
[codespell]
skip = .git,*.pdf,*.svg
# ignore-words-list =
19 changes: 19 additions & 0 deletions .github/workflows/codespell.yml
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---
name: Codespell

on:
push:
branches: [master]
pull_request:
branches: [master]

jobs:
codespell:
name: Check for spelling errors
runs-on: ubuntu-latest

steps:
- name: Checkout
uses: actions/checkout@v3
- name: Codespell
uses: codespell-project/actions-codespell@v1
2 changes: 1 addition & 1 deletion preprocessing/step1_preproc.sh
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ cat $raw_dir/check_volumes/$output

# STEP 3: unzip dicoms
# NOTE: Look at your dcm folder and check that your dicoms end in .gz. If they end in .gz, you need to run this line.
# Otherwise, don't run. If they have mutliple .gz.gz endings, you will have to run multiple times until they are no longer
# Otherwise, don't run. If they have multiple .gz.gz endings, you will have to run multiple times until they are no longer
# zipped!
echo "unzipping session $session dicoms"
gunzip $raw_dir/$subj_dir/dcm/*.gz # NOTE: you may have to do this multiple times if your files are double zipped
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