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Achievements

Achievement: Pair ExtraordinaireAchievement: Starstruckx3Achievement: Pull Sharkx2Achievement: Galaxy BrainAchievement: QuickdrawAchievement: YOLO

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cafferychen777/README.md

Chen Yang (Caffery)

Statistics PhD @ Texas A&M · Building LLM-powered tools for computational biology

Website Google Scholar Twitter LinkedIn

Featured

mLLMCelltype · ⭐ 620+

Multi-LLM consensus for scRNA-seq cell type annotation. Outperforms SOTA by 15% accuracy.

Paper PyPI Web

FlashDeconv · New

Atlas-scale spatial deconvolution via structure-preserving sketching. Orders of magnitude faster.

Paper PyPI

ChatSpatial · New

MCP server for spatial transcriptomics. Chat with your data using 60+ methods.

PyPI

ggpicrust2 · 180+ Citations

R package for PICRUSt2 functional profile analysis.

CRAN Downloads

More Tools

Project Description Links
MicrobiomeStat Longitudinal microbiome analysis CRAN Downloads
LLMCal Text-to-calendar via LLM GitHub
Gmail MCP Gmail integration for AI assistants GitHub

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  1. ggpicrust2 ggpicrust2 Public

    Make Picrust2 Output Analysis and Visualization Easier

    R 174 26

  2. MicrobiomeStat MicrobiomeStat Public

    Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

    R 46 5

  3. MicrobiomeStat-Turtorial-Professional-Version MicrobiomeStat-Turtorial-Professional-Version Public

    MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome d…

    6 2

  4. awesome_spatial_omics awesome_spatial_omics Public

    Forked from crazyhottommy/awesome_spatial_omics

    tools and notes for spatial omics

    1

  5. mLLMCelltype mLLMCelltype Public

    🏆 #1 Multi-LLM consensus framework | 550+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation tool

    Python 623 52

  6. LLMCal LLMCal Public

    AI-powered PopClip extension to turn natural language into calendar events (Apple/Google), with multilingual, recurring events, reminders, and meeting link parsing.

    Shell 3