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DBS and INDEL colors don't exactly match COSMIC

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In campbio/BAGEL;

· achevali opened on Sep 27, 2020

Add real data examples to vignette

documentationImprovements or additions to documentationImprovements or additions to documentation

qualityImprovement in code style, naming, and documentationImprovement in code style, naming, and documentation

Status: Open.

#57 In campbio/BAGEL;

· achevali opened on Sep 8, 2020

Example dataset

qualityImprovement in code style, naming, and documentationImprovement in code style, naming, and documentation

Status: Open.

#50 In campbio/BAGEL;

· joshua-d-campbell opened on Aug 28, 2020

loading of BSgenome and TxDb packages

qualityImprovement in code style, naming, and documentationImprovement in code style, naming, and documentation

Status: Open.

#49 In campbio/BAGEL;

· joshua-d-campbell opened on Aug 28, 2020

helper functions format

qualityImprovement in code style, naming, and documentationImprovement in code style, naming, and documentation

Status: Open.

#48 In campbio/BAGEL;

· joshua-d-campbell opened on Aug 28, 2020

Signature order in plots

bugSomething isn't workingSomething isn't working

Status: Open.

#47 In campbio/BAGEL;

· joshua-d-campbell opened on Aug 28, 2020

Rainfall plot of mutations along the genome

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In campbio/BAGEL;

· achevali opened on Aug 12, 2020

Deal with mismatch in sample annotation and counts table occurring

bugSomething isn't workingSomething isn't working

Status: Open.

#39 In campbio/BAGEL;

· achevali opened on Aug 11, 2020

Decide what to do about 0 count samples in a result table

questionFurther information is requestedFurther information is requested

Status: Open.

#38 In campbio/BAGEL;

· achevali opened on Aug 10, 2020

Plot Grid Recon Error

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In campbio/BAGEL;

· achevali opened on Jun 5, 2020

Parallelize generate_result_grid

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In campbio/BAGEL;

· achevali opened on Jan 16, 2020

Genome check

enhancementNew feature or requestNew feature or request

Status: Open.

#2 In campbio/BAGEL;

· joshua-d-campbell opened on Dec 2, 2019