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Do not unnecessarily increase community numbers in assign_communities #21

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Merged
maltekuehl merged 1 commit into from
Nov 26, 2025
Merged

Do not unnecessarily increase community numbers in assign_communities #21

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5 changes: 3 additions & 2 deletions spatiomic/segment/_assign_communities.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,8 +50,9 @@ def assign_communities(
# Initialize output with same shape as masks
community_image = np.zeros_like(masks)

# Assign community labels (adding 1 to avoid confusion with background)
# Assign community labels (adding 1 to avoid confusion with background, if needed)
pseudocount = 1 if communities_array.min() == 0 else 0
for i, region_id in enumerate(unique_regions):
community_image[masks == region_id] = communities_array[i] + 1
community_image[masks == region_id] = communities_array[i] + pseudocount

return community_image