Conversation
IvanKozlov98
left a comment
IvanKozlov98
left a comment
There was a problem hiding this comment.
Привет, хорошая работа!
Оценка: 50/50
Comment on lines
+67
to
+74
| parser = argparse.ArgumentParser(prog ='FASTQ-filtrator', description="Filtration parameters", epilog='Have a good day!') | ||
| parser.add_argument("input_fastq", help="Path to the FASTQ file") | ||
| parser.add_argument("--gc_bounds", type=float, nargs='*', default=[0, 100], | ||
| help="Interval for GC %% value (one value = max only, two = min and max)") | ||
| parser.add_argument("--length_bounds", type=float, nargs='*', default=[0, 2**32], | ||
| help="Interval for length value (one value = max only, two = min and max)") | ||
| parser.add_argument("--quality_threshold", type=float, default=0, | ||
| help="Average read quality threshold for filtering") |
There was a problem hiding this comment.
это лучше в отдельную функцию вынести
|
|
||
|
|
||
| parser = argparse.ArgumentParser(prog ='FASTQ-filtrator', description="Filtration parameters", epilog='Have a good day!') | ||
| parser.add_argument("input_fastq", help="Path to the FASTQ file") |
There was a problem hiding this comment.
можно посмотреть сюда — https://docs.python.org/3/library/argparse.html#filetype-objects
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.