error in code at tiles.py#4

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SamirJabari wants to merge 26 commits intoderoneriksson:masterfrom

ChristophNeuner:master

Commits on Dec 28, 2019

lots of refactoring; wsi to tiles with one method; removed lots of unnecessary code
ChristophNeuner
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util show functions take list of paths instead of one path now
ChristophNeuner
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tile_scoring_function added as parameter to tiles.WsiToTiles
ChristophNeuner
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Commits on Jan 2, 2020

added tiles.WsisToTilesMultithreaded to extract tiles from WSIs in parallel; removed lots of unnecessary print statements; updated example notebook
ChristophNeuner
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Commits on Jan 10, 2020

added possibility to extract tiles from ROIs that are in a format like png and not in a wsi format like ndpi
ChristophNeuner
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bugfix
ChristophNeuner
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Commits on Jan 17, 2020

added possibility to define a tile naming function
ChristophNeuner
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Commits on Jan 28, 2020

bugfix
ChristophNeuner
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Commits on Feb 20, 2020

added methods to directly extract a tile from a wsi or pil image; added level information to tile
ChristophNeuner
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Commits on Feb 21, 2020

tiles can be extracted from specified level of wsi; a csv file with tile coordinates in wsi can be generated for on the fly tile extracting during training
ChristophNeuner
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Commits on Feb 22, 2020

WsiOrROIToTilesand WsiOrROIToTilesMultithreaded now return pandas dataframe with tile_names, wsi_paths, x, y, width and height of the tiles to be extracted
ChristophNeuner
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bugfix, if no top_tiles
ChristophNeuner
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bugfix in tile get_tile_image_path if tile.tiles_folder_path is None
ChristophNeuner
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fixed typo
ChristophNeuner
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bugfix when processing rois
ChristophNeuner
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bugfix: because of .get() the WsiOrROIToTilesMultithreaded was blocked and not running in parallel, result now processed in callback
ChristophNeuner
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Commits on Apr 9, 2020

bugfix in tiles.tile_to_pil_tile
ChristophNeuner
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Commits on Apr 16, 2020

added function to plot whole-slide image with overlay for every tile, that passed scoring
ChristophNeuner
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added missing imports
ChristophNeuner
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small referencing and naming fix
ChristophNeuner
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Commits on Apr 17, 2020

Commits on Apr 23, 2020

bugfix, forgot to rename parameter
ChristophNeuner
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Create README.md
Christoph Neuner
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Update README.md
Christoph Neuner
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Commits on Nov 15, 2022

Update README.md
ChristophNeuner
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