OpsiGen

OpsiGen that utilizes geometric deep learning to predict the absorption wavelength of rhodopsins solely based on their sequences.

How to run OpsiGen locally:

1. Clone the git repository : git clone https://github.cs.huji.ac.il/dina-lab/cryo-folding/tree/colab
2. install the requirements using "pip install -r requirements.txt"
3. insert the fasta file to the folder pipeline_auto under the name "sample_fasta.fasta"
4. insert the pdb file to the folder pipeline_auto under the name "sample_pdb.pdb"
5. cd ./pipeline_auto; ./run.sh
6. cd ./predict; ./run.sh