DNA Origami Goniometer assisted cryoEM data analysis package. Python scripts and classes in this package can be used for other cryo-EM projects. Please cite DNA Origami Goniometers if you use this python package for your work.
- Relion
- Python 3.5 or above.
Installing this package inside python virtual environment is high encouraged. After installing virtualenv and virtualenvwrapper, create a python3 virtual environnment.
$mkvirtualenv em -p python3.
Remember to activate the virtualenvironment
$workon em
For most up to date version of the package, clone or download. Inside the cryoorigami package folder, execute
$(em) pip install .
If you would like to run the scripts in any path, make sure to add the bin folder in $PATH variable in your .bash_profile or .bashrc file.
For usage type em_***.py -h
em_addstarcols.py: Add new columns to a star file.
em_align2D.py: Align particles from 2D classification output to a reference class average.
em_alignclassaverages.py: Align class averages to a single class.
em_cistempars.py: Estimate cistem parameters for manual refinement run.
em_dfsc: Calculate directional fsc.
em_csparc2star: Convert csparc files to star file.
em_par2star: Convert par file to star.
em_stackcreate.py: Create particle stack from star file.
em_subtract2D.py: Subtract from particle images.
em_plotfsc.py: Plot FSC curve from xml data file.
em_plotstar.py: Plot star file data.
© 2020 Tural Aksel