Cmake ify

.gitignore

@@ -1,2 +1,7 @@
 *.o
-fastahack
+fastahack
+libfastahack.a
+CMakeFiles
+CMakeCache.txt
+cmake_install.cmake
+Makefile

CMakeLists.txt

@@ -0,0 +1,21 @@
+cmake_minimum_required(VERSION 2.8)
+
+add_library(fastahack
+	FastaHack.cpp
+	Fasta.cpp
+	split.cpp
+	disorder.c
+)
+
+add_executable(fastahack-bin
+	FastaHack.cpp
+	disorder.c
+)
+
+set_target_properties(fastahack-bin
+	PROPERTIES OUTPUT_NAME fastahack
+)
+
+target_link_libraries(fastahack-bin
+	fastahack
+)

FastaHack.cpp

@@ -1,7 +1,9 @@
 #include "Fasta.h"
 #include <stdlib.h>
 #include <getopt.h>
+extern "C" {
 #include "disorder.h"
+}
 
 void printSummary() {
     cerr << "usage: fastahack [options] <fasta reference>" << endl

README

@@ -25,6 +25,15 @@ extraction without RAM-intensive file loading operations.  This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.
 
+Build:
+
+Cmake is required to build this project. Issue the following commands from the
+fastahack director:
+
+	% cmake .
+	% make
+
+
 
 Notes: