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emo-bon / MetaGOflow Public

forked from EBI-Metagenomics/pipeline-v5

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Ro crate for the metaGOflow output#27

Merged

hariszaf merged 29 commits intodevelopemo-bon/MetaGOflow:developfrom

ro-crateemo-bon/MetaGOflow:ro-crateCopy head branch name to clipboard

Mar 25, 2023

Conversation Commits29 (29)Checks Files changed

Merged

Ro crate for the metaGOflow output#27
hariszaf merged 29 commits intodevelopfrom
ro-crate

Commits

Commits on Mar 22, 2023

init branch for issue #18
hariszaf
committed
software versions file
hariszaf
committed
remove unecessary output files; init ro-crate script
hariszaf
committed
remove unecessary output files; init ro-crate script
hariszaf
committed
Merge remote-tracking branch 'origin/develop' into ro-crate
hariszaf
committed
minor edits
hariszaf
committed
Merge branch 'develop' into ro-crate
hariszaf
committed
fix summary qc
hariszaf
committed
Merge remote-tracking branch 'origin/develop' into ro-crate
hariszaf
committed
fix qc_summary output filenames
hariszaf
committed
fix qc_summary output filenames
hariszaf
committed
remove prov output folder
hariszaf
committed
all test cases
hariszaf
committed

Commits on Mar 24, 2023

logic to address #18
hariszaf
committed
build ro-crate as zip #18
hariszaf
committed
ro-crate example #18
hariszaf
committed
edits to keep only for the record; remove file afterwards
hariszaf
committed
drop script
hariszaf
committed
edit wf output to remove chunks and merge ips parts to single file
hariszaf
committed
add embrc records #18
hariszaf
committed
return ips chunks
hariszaf
committed
set threads properly to exploit fat node on zorbas hpc
hariszaf
committed
edit ENA description #18
hariszaf
committed

Commits on Mar 25, 2023

minor edits reg #18
hariszaf
committed
ignore dev outputs
hariszaf
committed
cwd var
hariszaf
committed
add dataset metadata #18
hariszaf
committed
remove output dir so we keep only the .zip file that includes the proper ro-crate-metadata
hariszaf
committed
update the example ro-crate-metadata #18
hariszaf
committed

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