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eoinleen/README.md
  • 👋 Hi, I’m @eoinleen
  • 👀 I’m interested in molecular biology
  • 🌱 I’m currently learning python and bash
  • 💞️ I’m looking to collaborate on protein engineering and design
  • 📫 How to reach me -> e.leen@leeds.ac.uk
  • ⚡ Fun fact: It's now only x days until the heat death of the universe

Obviously feel free to use my code, but beware I really am a newbie coder!

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  1. protein-domain-Colabfold-pipeline protein-domain-Colabfold-pipeline Public

    Automated pipeline for protein domain extraction and AlphaFold2 multimer prediction. Converts PDBs to FASTA, extracts variable domains between conserved flanks, and prepares LocalColabFold inputs f…

    Python 1

  2. selective-fixed-labels selective-fixed-labels Public

    Automated pipeline for selective FIXED labels in ProteinMPNN motif design. Analyzes protein contacts, parses RFdiffusion TRB files, and generates scripts that fix only critical residues instead of …

    Python 2

  3. large_scale_Localcolabfold_job_slurm_job_manager large_scale_Localcolabfold_job_slurm_job_manager Public

    Production-ready SLURM workflow for high-throughput protein structure prediction using LocalColabFold. Processes thousands of sequences across multiple GPUs with optimized settings (2 models, 90% e…

    Shell

  4. PDB-tools PDB-tools Public

    PDB-tools-random!

    Jupyter Notebook

  5. AKTA-Prime_final AKTA-Prime_final Public

    Input xls output png

    Jupyter Notebook