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@imagejan
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I've been using this utility class StitchingUtils for a while now, e.g. when I need to stitch multi-series images that are not being read correctly via Bio-Formats, or for images that are loaded into memory already in scripting workflows, to avoid writing new files and relying on a TileConfiguration.txt file.

This adds the following static methods:

  • computeStitching(images, positions, dimensionality, computeOverlap) returning the translation models for each tile,

as well as:

  • fuseTiles(images, models, dimensionality, fusionType) and
  • fuseTiles(images, models, dimensionality) performing the actual fusion (with blending being the default fusion method).

As there seems to be some community interest in having more accessible stitching API (e.g. in the discussion of imagej/pyimagej#35), I thought it might make sense to migrate these utility methods upstream from faim-ij2-visiview-processing into this repository.

@StephanPreibisch, @ctrueden let me know what you think.

@ctrueden ctrueden requested a review from StephanPreibisch May 25, 2020 15:51
@ctrueden
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I think it would be great to add. @StephanPreibisch OK if we merge it?

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3 participants