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Replace deprecated time.clock() with time.perf_counter() #4

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Replace deprecated time.clock() with time.perf_counter() #4

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4 changes: 2 additions & 2 deletions src/gen-scref.py
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Original file line number Diff line number Diff line change
Expand Up @@ -289,7 +289,7 @@ def simulate_sc(source, n_snv, n_sc, sc, snv_loc=None, out='', ts_tv_p=0.71, ts_
for loc in snv_loc}

# loop through single cells
start_time = time.clock() # start timer
start_time = time.perf_counter() # start timer
sc_fnames = []
r = 1
for c in range(len(sc)):
Expand Down Expand Up @@ -320,7 +320,7 @@ def simulate_sc(source, n_snv, n_sc, sc, snv_loc=None, out='', ts_tv_p=0.71, ts_
outname = out+'%d'%(c+1)
write_sc(sc_obj = sc_gtypes, seq_type = 'alt_gtype', out = 'prototype' + outname) # write sequence before WGA

sim_time = time.clock() - start_time # store simulation time for display
sim_time = time.perf_counter() - start_time # store simulation time for display
logger.info('All done! Simulated %d SNVs in %d prototypes and %d single cells in %.2f seconds.'%(n_snv,len(sc),n_sc,sim_time))

# pack experiment results
Expand Down