Preventing SARS-CoV-2 superspreading events with antiviral intranasal sprays

Figure-generating code for the Journal of Theoretical Biology article, "Preventing SARS-CoV-2 superspreading events with antiviral intranasal sprays" by Booth, G et al.

When citing this work, please cite the original article linked above.

Reproducing figures

Each figure is produced by a series of Jupyter Notebooks:

• Figure 2D: Posterior predictive check of model simulation vs the incidence of symptomatic cases over time aboard the Diamond Princess cruiseship
• Figure 3: The impact of efficacy, uptake and intervention start time in passangers and crew on the total number of infections aboard the Diamond Princess cruiseship
• Figure 4A-C: SPHH conference contact network and weighted contact matrix
• Figure 4E-H: Treatment adherence vs dosing regimen on the number of infections averted at the SPHH conference, and the reduction in individual risk

Click here for the Diamond cruise ship transmission models.
Click here for the SPHH conference transmission model.