Adapt likelihood functions to MethylCounts and update test, manuals, and examples (alpha version). #154

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kasperdanielhansen merged 7 commits intohansenlab:develfrom

SrenBlikdal:devel

Nov 19, 2025

Commits on Nov 6, 2025

Add type=Cov to getMethylCounts and adjust likelihood functions to U for unmethylated
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merge changes from hansen lab into fork
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Commits on Nov 7, 2025

increase the number of tests for read.bedMethyl and test MethylCount output.
SrenBlikdal
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increase the number of tests for read.bedMethyl and test MethylCount output. fix typo
SrenBlikdal
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add test for likelihood_function for MethylCounts
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Commits on Nov 10, 2025