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H2MMpy

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@harripd harripd released this 17 Nov 00:29
· 213 commits to main since this release

Python implementation of H2MM originally published in Pirchi et. al. JPC 2016, 120, 13065
This code analyzes sequences of photon arrival times and colors and fits them to a hidden Markov model in an iterative process. A Viterbi path function also finds the most likely state-path given a H2MM model and a photon sequence.