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Incompatibility with newer ggplot (v 4.0.0)

Status: Open.

#60 In hdng/clonevol;

· dmkv1 opened on Nov 5, 2025

Example trees.tsv and variants.tsv files

Status: Open.

#59 In hdng/clonevol;

· aklein-705 opened on Jun 6, 2023

driver annotations on fishplot

Status: Open.

#58 In hdng/clonevol;

· mdiaz09 opened on Apr 21, 2023

error in convert.consensus.tree.clone.to.branch

Status: Open.

#57 In hdng/clonevol;

· jsha129 opened on Nov 23, 2022

No consensus multi-sample models provided.

Status: Open.

#56 In hdng/clonevol;

· pushpa-itagi opened on Aug 10, 2022

Questions about data input

Status: Open.

#55 In hdng/clonevol;

· xiw588 opened on Jul 26, 2022

could not find "'tree.tsv' and 'variants.tsv' these two files

Status: Open.

#54 In hdng/clonevol;

· alextwc opened on Jun 22, 2022

build_tree/infer.clonal.models unused argument error

Status: Open.

#53 In hdng/clonevol;

· nfarnoud opened on Apr 1, 2022

Error in merge.clone.trees

Status: Open.

#52 In hdng/clonevol;

· kxxxjo opened on Feb 6, 2022

infer.clonal.models() no rows to aggregate

Status: Open.

#51 In hdng/clonevol;

· Aaron-sqw opened on Dec 1, 2021

Data visualization when inferring a polyclonal model

Status: Open.

#50 In hdng/clonevol;

· Psrwnsr opened on Jul 19, 2021

cancer.initiation.model parameter in infer.clonal.models()

Status: Open.

#49 In hdng/clonevol;

· LucasLiu20200131 opened on Jan 24, 2021