Skip to content

Cell type, location and marker report#184

Open
anitacaron wants to merge 15 commits intomasterfrom
anitacaron/issue183
Open

Cell type, location and marker report#184
anitacaron wants to merge 15 commits intomasterfrom
anitacaron/issue183

Conversation

@anitacaron
Copy link
Collaborator

@anitacaron anitacaron commented Oct 7, 2022

There're two types of reports:

  1. one for each table [{table}_report.tsv]
  2. all tables merged without duplications [ct_loc_b_report.tsv]

After analysing the two reports above, we found some cases that there're different markers for the same cell type and location.
The cases are listed in the cell-loc-diff-markers.tsv file.

Fixes #183
Relate to hubmapconsortium/ccf-ontology#16

@anitacaron anitacaron requested review from dosumis and johardi October 7, 2022 18:10
@anitacaron anitacaron self-assigned this Aug 31, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Create report with terminal CT, location and marker

1 participant