This repository was archived by the owner on Apr 20, 2020. It is now read-only.
Fixes NameError exception while guessing file type #331
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Reproducible by opening n5 directory without n5 extension and if quilted
is not installed
ERROR 2019-12-23 14:51:40,501 log_exception 19155 140465532311360 Traceback (most recent call last):
File "ilastik-project/ilastik/ilastik/applets/dataSelection/dataSelectionGui.py", line 408, in addFileNames
new_infos = self._createDatasetInfos(roleIndex, paths)
File "ilastik-project/ilastik/ilastik/applets/dataSelection/dataSelectionGui.py", line 529, in _createDatasetInfos
info = self._createDatasetInfo(roleIndex, filePath, roi)
File "ilastik-project/ilastik/ilastik/applets/dataSelection/dataSelectionGui.py", line 578, in _createDatasetInfo
subvolume_roi=roi,
File "ilastik-project/ilastik/ilastik/applets/dataSelection/opDataSelection.py", line 538, in create_or_fallback_to_absolute
return cls(*args, **kwargs)
File "ilastik-project/ilastik/ilastik/applets/dataSelection/opDataSelection.py", line 531, in __init__
super().__init__(**fs_info_kwargs)
File "ilastik-project/ilastik/ilastik/applets/dataSelection/opDataSelection.py", line 439, in __init__
graph=Graph(), WorkingDirectory=self.base_dir, FilePath=self.filePath, SequenceAxis=self.sequence_axis
File "ilastik-project/lazyflow/lazyflow/operator.py", line 141, in __call__
instance._after_init()
File "ilastik-project/lazyflow/lazyflow/operator.py", line 304, in _after_init
self._setupOutputs()
File "ilastik-project/lazyflow/lazyflow/operator.py", line 498, in _setupOutputs
self.setupOutputs()
File "ilastik-project/lazyflow/lazyflow/operators/ioOperators/opInputDataReader.py", line 214, in setupOutputs
self.internalOperators, self.internalOutput = openFunc(filePath)
File "ilastik-project/lazyflow/lazyflow/operators/ioOperators/opInputDataReader.py", line 478, in _attemptOpenAsH5BlockStore
op = OpH5BlockStoreReader(parent=self)
NameError: name 'OpH5BlockStoreReader' is not defined
m-novikov
force-pushed
the
name-error
branch
from
4df1bba to
06de76a
Compare
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Reproducible by opening n5 directory without n5 extension and if quilted
is not installed