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Since BlobsManagerImpl grew to huge, I have refactored it and moved the inner
class BlobExecuter to a new file.
Various implementations of the interface AffinityManager.
BlobExecuter uses BlobsManagerImpl.affinityManager to getAffinity for each
thread.
When safelyCloseResources(), StreamNode thread calls Profiler thread.join().
StreamNode checks controllerConnection.isStillConnected() status before trying
to close the controller connection.
"be.blob == null" condition is added to avoid sending profile data after the
blob has been drained.
OnlineTuner.reconfigure() returns various negative values based on the different
failtures.
Codes which do not throw exceptions have been moved out from the try-catch
block.
Creates all appropriate directories. Makes soft links to 'data' and 'lib'.
Creates 'run.sh' and 'streamnode.sh' scripts.
OnlineTuner.java may report negative running time if the new confg is invalid
or the reconfiguration failed due to some other reasons. TimeLogProcessor
ignores negative values when calculating min running time.
Access those objects through Reconfigurer.
So that TimeLogProcessor can use this mathod to read the verify.txt.
evaluateConfig() uses cfgPrefix for logging purpose instead of cfgName.
Verifier.cfgPrefixes was adding 'hand' and 'final' cfg prefixes always.
This has been stopped.
Conflicts:
	lib/opentuner/streamjit/tuner2.py
Conflicts:
	src/edu/mit/streamjit/impl/common/drainer/AbstractDrainer.java
	src/edu/mit/streamjit/impl/compiler2/Compiler2.java
	src/edu/mit/streamjit/impl/compiler2/DoubleArrayConcreteStorage.java
	src/edu/mit/streamjit/impl/distributed/node/CfgStringProcessorImpl.java
	src/edu/mit/streamjit/impl/distributed/runtimer/OnlineTuner.java
In OpenTuner v0.5.0, ArrayParameter has been renamed to ParameterArray.
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