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jcoa05/README.md

Portfolio

Data analysis and visualization projects in epidemiology, machine learning, and global health.

Contents

Current projects

Project Description Tools Link
Stacked ensemble ML for resource-constrained settings Methodological demonstration of stacked ensemble learning executable on consumer hardware (4 GB RAM, < 4 cores, no GPU), targeting resource-constrained research settings. tidymodels, stacks, DALEX, fastshap MLH-SCI
Mosquito-borne disease prevention in France Analysis of complex survey data on preventive behaviour using cumulative link and zero-inflated negative binomial mixed-effects models. lme4, ordinal, glmmTMB ELIM-IP
Climate risk mapping of BSL3-4 laboratories Global mapping of high-containment laboratories to assess vulnerability to projected climate-related hazards (flooding, cyclones) based on IPCC scenarios. sf, leaflet BSL map

Past projects

Project Description Tools Link
Interactive SE2IR epidemic simulator Shiny-based tool for simulating epidemic dynamics with adjustable parameters (incubation period, contact rates) and real-time visualization. Docker, shiny, deSolve SE2IR tool
Predicting motor recovery after spinal cord injury Supervised learning model predicting 12-month motor score from acute-phase data (days 1-30) using an EMSCI-like simulated cohort. tidymodels, tune, fastshap EMSCI-ML
Maternal diet in the Pélagie Cohort Exploratory analysis of food consumption patterns among pregnant women using PCA, hierarchical clustering, logistic regression, and spatial methods. sf, FactoMineR R script
Columbus OH spatial analysis Spatial regression analysis of the Columbus, Ohio dataset. terra, spatialreg R script
AIESEC operations dashboard Multi-source interactive dashboard for Operations departments across 27 states at AIESEC Mexico. (Source links severed due to confidentiality.) Looker Studio Dashboard

Contact
Professional juan-carlos.ocampo(at)pasteur.fr
Personal jocampo1997(at)hotmail.com

Fun fact

When I worked as a cook, I made dinner for José Mujica, former president of Uruguay. He ordered rice, beans, and a piece of chicken (a cheap but tasty Ecuadorean meal).

Last updated December 2025

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  1. bsl-climate-risk bsl-climate-risk Public

    Mapping the distribution of high-containment laboratories and projected climate-related hazards

    HTML

  2. elimip elimip Public

    Analysis of complex survey data using cumulative link and zero-inflated negative binomial mixed-effects models

    R

  3. emsci-ml emsci-ml Public

    This project develops a supervised learning model to predict ISNCSCI motor score at 12 months post-injury using data from the first 30 days post-injury on an EMSCI-like simulated dataset.

    HTML

  4. seir-shiny seir-shiny Public

    Shiny-based, Dockerized visual tool for simulating epidemic dynamics with adjustable parameters.

    R