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basic works, but duo and trio fail

Status: Open.

#9 In jgust1/needLR;

· fakedrtom opened on Oct 9, 2025

Genotype assigned wrongly for needlr trio results even with same breakpoints

Status: Open.

#8 In jgust1/needLR;

· riyasj327 opened on Jul 24, 2025

difference in query_only labels in basic vs annotate_multisample?

Status: Open.

#7 In jgust1/needLR;

· haffenerpaige opened on Jun 23, 2025

required running from script directory

Status: Open.

#6 In jgust1/needLR;

· mulderdt opened on Apr 11, 2025

REF_GENOME is hardcoded in the trio shell script

Status: Open.

#5 In jgust1/needLR;

· mulderdt opened on Apr 10, 2025

-t option

Status: Open.

#2 In jgust1/needLR;

· wwgordon opened on Mar 4, 2025

Issue: Files Extracting into Different Directory Structure

Status: Open.

#1 In jgust1/needLR;

· poddarharsh15 opened on Oct 9, 2024