| Day | Material |
|---|---|
| 1 | bash (01_bash.rst) |
| 2 | Intro R (02_r.rst) |
| 2 | UCSC overview (06_ucsc.rst) |
| 3 | Intro R, continued (03_r.rst) |
| 3 | Genomics tools: BEDTools (04_genomics-tools-minimal.rst |
| 3? | ggplot2 tutorial |
Extras:
- Example bash script for RNA-seq:
rnaseq.bash - Example R script for running DESeq2 after the bash script:
deseq2.R - Full version of the BEDTools lesson
- Full version of the BEDTools integration with R of the BEDTools lesson
- Genomics tools: integrate BEDTools results with R
- ggplot2 example of visualizing qPCR data
- ggplot2 example of visualizing DESeq2 results
- Additional resources (
extras/resources.rst)