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Configurable #2

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f01fb06
The system is designed to be flexible for different types of bio-events.
li-chen Aug 8, 2013
4f6e3bf
Entity type and argument type.
Aug 8, 2013
bb1c812
Entity annotator
Aug 9, 2013
c3d64b7
Old changes
li-chen Aug 11, 2013
ac5dbeb
Merge branch 'configurable' of https://github.com/li-chen/ee into con…
li-chen Aug 11, 2013
45e450c
Modification made on XML schema.
Mar 9, 2014
cedc59e
feature: test by ant
rqsong Jun 21, 2015
b9cfaf4
feature: commit by ant
rqsong Jun 24, 2015
8463b4c
Update README
rqsong Jun 25, 2015
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26 changes: 26 additions & 0 deletions README
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Original file line number Diff line number Diff line change
Expand Up @@ -10,3 +10,29 @@ src - The source code.
LISENSE - The license of LitWay.
README - This file.



How to run the program?

1.build path -> add libraries -> ee,uima

2.build.xml
run as -> ant build... -> Refresh -> The entire workspace ->output is "./dist/litway-0.8.jar" -> build path -> add to build path

3.train
info.chenli.litway.bionlp13.ge
(1)TriggerRecogniser.java
argument is train data absolute path
(2)BindingRecogniser.java
argument is train data absolute path
(3)ArgumentRecogniser.java
argument is train data absolute path

ps:The word2vec file at "./word2vec/word2vec100"

4.test
info.chenli.litway.bionlp13.ge
EventExtractorBind2.java argument is test data absolute path

5.result path is "./result/"

57 changes: 57 additions & 0 deletions conf/config.xsd
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@@ -0,0 +1,57 @@
<?xml version="1.0"?>
<xs:schema attributeFormDefault="unqualified" elementFormDefault="qualified" xmlns:xs="http://www.w3.org/2001/XMLSchema">
<xs:annotation>
<xs:documentation>
* Filename : config.xsd
* Description: XML Schema for BioNLP
* Author(s) : Chen Li
* Revision : $Id: config.xsd 8275 2013-10-16 16:28:25Z $
* $HeadURL: https://github.com/li-chen/ee $
*
* Copyright 2013 Chen Li
*
* This software is licensed according to the terms described in the file
* named "LICENSE.txt" included with this distribution and available
* online at https://github.com/li-chen/ee/LICENSE.txt
</xs:documentation>
</xs:annotation>
<xs:element name="network">
<xs:complexType>
<xs:sequence>
<xs:element name="entities">
<xs:complexType>
<xs:sequence>
<xs:element name="entity" type="xs:string" minOccurs="1"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="events">
<xs:complexType>
<xs:sequence>
<xs:element name="event" minOccurs="1" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="type" type="xs:string"/>
<xs:element name="arguments">
<xs:complexType>
<xs:sequence>
<xs:element name="argument" minOccurs="1" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="name" type="xs:string"/>
<xs:attribute name="type" type="xs:string"/>
<xs:attribute name="multi" type="xs:boolean"/>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:schema>
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