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fix install errors for dependency issues #47

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d-callan wants to merge 2 commits into from
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fix install errors for dependency issues #47

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e351d2f
try to get everything on same veupathutils as computations package is
d-callan Nov 18, 2025
c3fa07d
attempt 1 fix maaslin dep
d-callan Nov 18, 2025
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11 changes: 6 additions & 5 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: MicrobiomeDB
Title: Curated Data and Analysis Tools from MicrobiomeDB.org
Version: 1.1.1
Version: 1.1.3
Authors@R:
c(person(given = "Danielle",
family = "Callan",
Expand All @@ -12,18 +12,19 @@ Imports:
data.table,
DESeq2,
igraph,
veupathUtils,
veupathUtils (>= 2.7.0),
Maaslin2,
methods,
microbiomeComputations,
microbiomeComputations (>= 5.1.6),
purrr,
SummarizedExperiment,
TreeSummarizedExperiment
Remotes:
microbiomeDB/veupathUtils,
VEuPathDB/veupathUtils,
microbiomeDB/corGraph,
microbiomeDB/microbiomeComputations,
microbiomeDB/microbiomeData
microbiomeDB/microbiomeData,
bioc::Maaslin2
URL: https://github.com/microbiomeDB/MicrobiomeDB, https://microbiomedb.github.io/MicrobiomeDB/
BugReports: https://github.com/microbiomeDB/MicrobiomeDB/issues
Description: This package is intended to be used to explore the curated datasets from MicrobiomeDB.org, as well as your own datasets. It comes pre-packaged with the same functions used to power the analysis tools from the website. It also contains functions to facilitate easily transforming data between our custom objects, phyloseq objects, and .biom files that you can upload to the website.
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