MSK KO village cell typing

Annotate cell types for MSK KO village scRNAseq data.

The final cell type annoation is saved in output/MSK_KO_village_meta_data.csv.

Summary of clusters

output/_cluster_summary/cluster_summary_heatmap.pdf illustrates the distributoin of cells within each cluster across samples or time points.

output/_cluster_summary/cluster_summary_res_0.5.xlsx summarizes the marker genes and cell type of each cluster.

This figure illusrates the marker genes of each cluster.