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No fasta input implemented?

bugSomething isn't workingSomething isn't working

Status: Open.

#129 In nf-core/phageannotator;

· Sarani-NS opened on Jun 12, 2025

iPHOP downloads the wrong database for its current version

bugSomething isn't workingSomething isn't working

Status: Open.

#127 In nf-core/phageannotator;

· harper357 opened on May 1, 2025

Running geNomad and COBRA fails because of altered FASTA sequence name

bugSomething isn't workingSomething isn't working

Status: Open.

#125 In nf-core/phageannotator;

· harper357 opened on Apr 25, 2025

COBRA options schema are listed as strings when they should be ints

bugSomething isn't workingSomething isn't working

Status: Open.

#123 In nf-core/phageannotator;

· harper357 opened on Apr 24, 2025

Add prophage tracer to predict prophage activity

Status: Open.

#113 In nf-core/phageannotator;

· CarsonJM opened on Apr 18, 2024

Replace mash screen with sylph

Status: Open.

#112 In nf-core/phageannotator;

· CarsonJM opened on Apr 18, 2024

Replace BLAST with skani for ani clustering

Status: Open.

#111 In nf-core/phageannotator;

· CarsonJM opened on Apr 18, 2024

Add clustering with Inphared to assign ICTV taxonomy

Status: Open.

#105 In nf-core/phageannotator;

· CarsonJM opened on Mar 20, 2024

Add viralFlye to nf-core phageannotator

Status: Open.

#104 In nf-core/phageannotator;

· lborcard opened on Mar 18, 2024

Prepare phageannotator for first release

Status: Open.

#103 In nf-core/phageannotator;

· CarsonJM opened on Mar 16, 2024

Update nf-core/phageannotator nf-test structure to match fetchngs

Status: Open.

#94 In nf-core/phageannotator;

· CarsonJM opened on Feb 19, 2024

Update nf-tests so full modules are only run in module tests

Status: Open.

#93 In nf-core/phageannotator;

· CarsonJM opened on Feb 15, 2024