OCD Patients DATA 550 Final

Data

• data/ contains the dataset for the project
• code/ will contain codes that produces tables and plots
• output/ will contain output that successfully run

Initial Code Description

data/load_ocddata.R

• Run all the codes in this Rscript to load the data.

code/01_make_output.R

• Generates the table that provides insights into the education level, and marital status, reported by individuals of different ethnicities within the OCD patient dataset
• Run all the codes in this script
• Generates the required figure using gtsummary
• Saves the table as .rds object in the output/ folder
• Check in output/ to ensure that the tables/graphs are saved

code/02_make_output.R

• Analyzes the relationship between demographic factors, duration of symptoms, OCD types, and severity
• Generates the required figure using ggplot2
• Renders the final report using report.Rmd
• Check in output/ to ensure that the tables/graphs are saved

Output Directory

• Demographics_Table.csv: This file contains the table that provides insights into the marital status and education level reported by individuals of different ethnicities within the OCD patient dataset, generated by code/01_make_output.R.

• gplot_data.png: This file contains the figure that visualizes the relationship between demographic factors, duration of symptoms and genders code/02_make_output.R.

• obsession_severity.png: This file contains the figure that visualizes the relationship between obsession type and Obsession Severity Score code/02_make_output.R.

• compulsion_severity.png: This file contains the figure that visualizes the relationship between compulsion type and Compulsion Severity Score code/02_make_output.R.

• obsession_duration.png: This file contains the figure that visualizes the relationship between obsession type and Obsession duration code/02_make_output.R.

• compulsion_duration.png: This file contains the figure that visualizes the relationship between compulsion type and compulsion duration code/02_make_output.R.

report.Rmd

• Reads the tables and figures generated by code/01_make_output.R and code/02_make_output.R
• Integrates the analysis, tables, and figures into the final report
• run all the codes and save the file
• reproduce the report using make command on terminal

Dockerfile The folder dockerimage containes the images created. Execute this command in terminal docker build -t ocd-patients-report . Link to Dockerhub: https://hub.docker.com/repository/docker/ngunmen/project/general

Makefile for Docker

Usage

Clone the repository. Run make project to build the Docker image. Run make final_report/report.html to generate the report.

Makefile Rules

• project: Builds the Docker image.
• final_report/report.html: Generates the report.

Find the generated report in the final_report directory.

Clone the repository and navigate to the repository directory.

Build the Docker image using the following command: docker build -t project .

Run the Docker container with the following command:

`docker run -v $(pwd)/final_report:/finalproject/final_report ngunmen/project:latest`