Group 3 (THEpackage)

.github/workflows/pythonpackage.yml

@@ -0,0 +1,37 @@
+name: Python package
+
+on: [push]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 4
+      matrix:
+        python-version: [3.7]
+
+    steps:
+    - uses: actions/checkout@v1
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        cd Projects/group3/the_package/
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+        pip install .
+    - name: Lint with flake8
+      run: |
+        cd Projects/group3/the_package/
+        pip install flake8
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with unittest
+      run: |
+        cd Projects/group3/the_package/
+        python -m unittest

Projects/Project_1_HendricksLeukhina.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -99,17 +99,62 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 74,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "<BarContainer object of 9 artists>"
+      ]
+     },
+     "execution_count": 74,
+     "metadata": {},
+     "output_type": "execute_result"
+    },
+    {
+     "data": {
+      "image/png": "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\n",
+      "text/plain": [
+       "<Figure size 432x288 with 1 Axes>"
+      ]
+     },
+     "metadata": {
+      "needs_background": "light"
+     },
+     "output_type": "display_data"
+    }
+   ],
    "source": [
     "# Parameters to use in simulation\n",
     "gamma_min = 0.35\n",
     "gamma_1 = 0.6778\n",
     "gamma_2 = 1.0556\n",
     "sigma = 0.25\n",
     "\n",
+    "Tc = 6\n",
+    "ncoursesattempted = 12\n",
+    "ncreditspercourse = 3\n",
+    "ncreditsgrad = 125\n",
+    "\n",
+    "# Simulate\n",
+    "from transcripty import HeterogeneousProbabilityModel, CommonProbabilityModel\n",
+    "\n",
+    "model = HeterogeneousProbabilityModel(\n",
+    "    gamma_min, \n",
+    "    gamma_1, \n",
+    "    gamma_2, \n",
+    "    sigma, \n",
+    "    Tc, \n",
+    "    ncoursesattempted, \n",
+    "    ncreditspercourse, \n",
+    "    ncreditsgrad)\n",
+    "\n",
+    "a_i, gpa_i, credits = model.simulate(25000)\n",
+    "\n",
     "# Deciles from the data\n",
+    "y1_totalcredit_deciles = np.quantile(credits[:, 0] + credits[:, 1], np.linspace(0.1, 0.9, 9))\n",
+    "  \n",
     "y2_totalcredit_deciles = np.array([\n",
     "    29.0, 41.0, 48.0, 53.37, 57.0, 60.0, 62.97, 66.0, 72.0\n",
     "])\n",
@@ -119,7 +164,7 @@
     "\n",
     "x = np.linspace(10, 90, 9)\n",
     "\n",
-    "ax.bar(x-1.5, y2_totalcredit_deciles, width=2.)\n",
+    "ax.bar(x-1.5, y1_totalcredit_deciles, width=2.)\n",
     "ax.bar(x+1.50, y2_totalcredit_deciles, width=2.)"
    ]
   },
@@ -136,21 +181,66 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 80,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "<BarContainer object of 9 artists>"
+      ]
+     },
+     "execution_count": 80,
+     "metadata": {},
+     "output_type": "execute_result"
+    },
+    {
+     "data": {
+      "image/png": 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nVfXT1axvNSTZRu/D3YuBY8Db6Q2uvHeAJB8E/oTe015PAu+gN+ftvWOAS1KbnEKRpEYZ4JLUKANckhplgEtSowxwSWqUAS5JjTLAJalR/wdIfbd90wqbkAAAAABJRU5ErkJggg==\n",
+      "text/plain": [
+       "<Figure size 432x288 with 1 Axes>"
+      ]
+     },
+     "metadata": {
+      "needs_background": "light"
+     },
+     "output_type": "display_data"
+    }
+   ],
    "source": [
     "# Deciles from the data\n",
     "y2_totalcredit_deciles = np.array([\n",
     "    29.0, 41.0, 48.0, 53.37, 57.0, 60.0, 62.97, 66.0, 72.0\n",
     "])\n",
     "\n",
+    "p = 0.7\n",
+    "\n",
+    "# Simulate\n",
+    "from transcripty import HeterogeneousProbabilityModel, CommonProbabilityModel\n",
+    "\n",
+    "model = CommonProbabilityModel(\n",
+    "    p,\n",
+    "    sigma, \n",
+    "    Tc, \n",
+    "    ncoursesattempted, \n",
+    "    ncreditspercourse, \n",
+    "    ncreditsgrad)\n",
+    "\n",
+    "a_i, gpa_i, credits = model.simulate(25000)\n",
+    "\n",
+    "# Deciles from the data\n",
+    "y1_totalcredit_deciles = np.quantile(credits[:, 0] + credits[:, 1], np.linspace(0.1, 0.9, 9))\n",
+    "  \n",
+    "y2_totalcredit_deciles = np.array([\n",
+    "    29.0, 41.0, 48.0, 53.37, 57.0, 60.0, 62.97, 66.0, 72.0\n",
+    "])\n",
+    "\n",
     "# Code to help you plot\n",
     "fig, ax = plt.subplots()\n",
     "\n",
     "x = np.linspace(10, 90, 9)\n",
     "\n",
-    "ax.bar(x-1.5, y2_totalcredit_deciles, width=2.)\n",
+    "ax.bar(x-1.5, y1_totalcredit_deciles, width=2.)\n",
     "ax.bar(x+1.50, y2_totalcredit_deciles, width=2.)"
    ]
   },
@@ -193,7 +283,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.4"
+   "version": "3.6.9"
   }
  },
  "nbformat": 4,

Projects/group3/docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

Projects/group3/docs/_build/html/.buildinfo

@@ -0,0 +1,4 @@
+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 4ffa8b9085ae1990e04c88c5c826a2f8
+tags: 645f666f9bcd5a90fca523b33c5a78b7

Projects/group3/docs/_build/html/_sources/index.rst.txt

@@ -0,0 +1,20 @@
+.. the_package documentation master file, created by
+   sphinx-quickstart on Fri Dec  6 12:50:59 2019.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to the_package's documentation!
+=======================================
+
+.. toctree::
+   :maxdepth: 3
+   :caption: Contents:
+
+   source/modules
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`

Projects/group3/docs/_build/html/_sources/source/modules.rst.txt

@@ -0,0 +1,7 @@
+the_package
+===========
+
+.. toctree::
+   :maxdepth: 4
+
+   the_package

Projects/group3/docs/_build/html/_sources/source/somename.rst.txt

@@ -0,0 +1,22 @@
+somename package
+================
+
+Submodules
+----------
+
+somename.regress\_ols module
+----------------------------
+
+.. automodule:: somename.regress_ols
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: somename
+   :members:
+   :undoc-members:
+   :show-inheritance:

Projects/group3/docs/_build/html/_sources/source/the_package.rst.txt

@@ -0,0 +1,30 @@
+the\_package package
+====================
+
+Submodules
+----------
+
+the\_package.logit module
+-------------------------
+
+.. automodule:: the_package.logit
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+the\_package.ols module
+-----------------------
+
+.. automodule:: the_package.ols
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: the_package
+   :members:
+   :undoc-members:
+   :show-inheritance: