Userspace install of the libraries

.github/workflows/build_from_source_on_Ubuntu_jammy_22.04

@@ -32,3 +32,11 @@ jobs:
         run: |
           cd openmc_install_scripts/Ubuntu_22.04
           ./openmc-install.sh
+      - name: cad-to-openmc-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./cad-to-openmc-install.sh
+      - name: test-install
+        run: |
+          cd openmc_install_scripts/tests
+          ./run-test.sh

.github/workflows/python-app.yml

@@ -0,0 +1,48 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python application
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '44 4 * * 0'
+jobs:
+  run-openmc-installer:
+    runs-on: ubuntu-22.04
+    steps:
+      - name: checkout_main_repo
+        uses: actions/checkout@v3
+        with:
+          repository: 'openmsr/openmc_install_scripts'
+          ref: '${{github.sha}}'
+          path: openmc_install_scripts
+          submodules: true
+      - name: bootstrap
+        run: sudo apt-get -y update
+      - name: moab-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./moab-install.sh
+      - name: double_down-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./double_down-install.sh
+      - name: dagmc-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./dagmc-install.sh
+      - name: openmc-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./openmc-install.sh
+      - name: cad-to-openmc-install
+        run: |
+          cd openmc_install_scripts/Ubuntu_22.04
+          ./cad-to-openmc-install.sh
+      - name: test-install
+        run: |
+          sudo apt-get install libgl1-mesa-glx libglu1-mesa libxcursor1 libxinerama1
+          sudo pip install -U numpy
+          cd openmc_install_scripts/tests
+          ./run-test.sh

Ubuntu_22.04/cad-to-openmc-install.sh

@@ -0,0 +1,32 @@
+################################################################################
+#CAD_to_openMC install
+################################################################################
+#!/bin/bash
+set -ex
+
+WD=`pwd`
+name=`basename $0`
+package_name='CAD_to_openMC'
+
+#install_prefix="/opt"
+#build_prefix="$HOME/openmc"
+
+#if there is a .done-file then skip this step
+if [ ! -e ${name}.done ]; then
+  mkdir -p $HOME/openmc
+  cd $HOME/openmc
+  if [ ! -e CAD_to_openMC ]; then
+    git clone https://github.com/openmsr/CAD_to_openMC.git
+  else
+    cd CAD_to_openMC
+    git fetch
+    git pull
+    cd ..
+  fi
+  cd ${WD}
+  touch ${name}.done
+else
+  echo CAD_to_openMC appears already to be installed \(lock file ${name}.done exists\) - skipping.
+fi
+
+sudo pip install -r $HOME/openmc/CAD_to_openMC/requirements.txt

Ubuntu_22.04/dagmc-install.sh

@@ -25,8 +25,19 @@ if [ ! -e ${name}.done ]; then
 
   mkdir -p $HOME/openmc/DAGMC
   cd $HOME/openmc/DAGMC
-  git clone --single-branch --branch develop --depth 1 https://github.com/svalinn/DAGMC.git
-  mkdir build
+  if [ ! -e DAGMC ]; then
+    git clone --single-branch --branch develop --depth 1 https://github.com/svalinn/DAGMC.git
+  else
+    cd DAGMC
+    git checkout develop
+    git fetch
+    git pull
+    cd ..
+  fi
+
+  if [ ! -e build ]; then
+    mkdir build
+  fi
   cd build
   cmake ../DAGMC -DBUILD_TALLY=ON \
                -DMOAB_DIR=$HOME/openmc/MOAB \

Ubuntu_22.04/double_down-install.sh

@@ -4,9 +4,13 @@
 #!/bin/bash
 set -ex
 
-#embree compile & install
-#./embree-install.sh
-#echo "Compiled & installed embree, proceeding..."
+# uncomment to install embree or define as an environmental variable
+# BUILD_EMBREE=1
+# embree compile & install
+if [ $BUILD_EMBREE ]; then
+  ./embree-install.sh
+  echo "Compiled & installed embree, proceeding..."
+fi
 
 #moab compile & install
 ./moab-install.sh
@@ -29,11 +33,24 @@ if [ ! -e ${name}.done ]; then
 
   mkdir -p $HOME/openmc/double-down
   cd $HOME/openmc/double-down
-  git clone --single-branch --branch main --depth 1 https://github.com/pshriwise/double-down.git
-  mkdir build
+  if [ ! -e double-down ]; then
+    git clone --single-branch --branch main --depth 1 https://github.com/pshriwise/double-down.git
+  else
+    cd double-down;
+    git checkout main
+    git fetch
+    git pull
+    cd ..
+  fi
+  if [ ! -e build ]; then
+    mkdir build
+  fi
+
   cd build
-  cmake ../double-down -DMOAB_DIR=$HOME/openmc/MOAB \
-                     -DCMAKE_INSTALL_PREFIX=$HOME/openmc/double-down
+  cmake ../double-down \
+    -DMOAB_DIR=$HOME/openmc/MOAB \
+    $(if [ $BUILD_EMBREE ]; then echo "-DEMBREE_DIR=$HOME/openmc/embree"; fi) \
+    -DCMAKE_INSTALL_PREFIX=$HOME/openmc/double-down
 
   make -j $ccores
   make install

Ubuntu_22.04/embree-install.sh

@@ -31,15 +31,22 @@ if [ ! -e $0.done ]; then
    cd openmc
    mkdir -p embree
    cd embree
-   git clone --single-branch --branch v3.13.3 --depth 1 https://github.com/embree/embree.git
-   mkdir build
+   if [ ! -e embree ]; then
+      git clone --single-branch --branch v3.13.3 --depth 1 https://github.com/embree/embree.git
+   else
+      cd embree
+      git checkout v3.13.3
+      git fetch
+      git pull
+      cd ..
+   fi
+   mkdir -p build
    cd build
    cmake ../embree -DCMAKE_INSTALL_PREFIX=$HOME/openmc/embree \
                 -DEMBREE_ISPC_SUPPORT=OFF \
-		-DEMBREE_TUTORIALS=OFF
+                -DEMBREE_TUTORIALS=OFF
    make -j $ccores
-   sudo make install
-   rm -rf embree/build embree/embree
+   make install
 
    cd ${WD}
    touch ${0}.done

Ubuntu_22.04/install-all.sh

@@ -8,8 +8,5 @@ echo 'Defaults    timestamp_timeout=-1' | sudo EDITOR='tee -a' visudo
 ./openmc-install.sh
 echo "Compiled & installed openmc, done."
 
-echo "Running test script..."
-python test_openmc.py
-
-#remove timestamp update
-sudo sed -i '/Defaults    timestamp_timeout=-1/d' /etc/sudoers
+./cad-to-openmc-install.sh
+echo "Compiled & installed CAD_to_openMC, done."

Ubuntu_22.04/moab-install.sh

@@ -35,15 +35,28 @@ if [ ! -e ${name}.done ]; then
 
   mkdir -p $HOME/openmc/MOAB
   cd $HOME/openmc/MOAB
-  git clone --single-branch --branch 5.3.1 --depth 1 https://bitbucket.org/fathomteam/moab.git
-  mkdir -p build
+
+  if [ ! -e moab ]; then
+    git clone --single-branch --branch 5.3.1 --depth 1 https://bitbucket.org/fathomteam/moab.git
+  else
+    cd moab && \
+    git checkout 5.3.1 && \
+    git fetch && \
+    git pull && \
+    cd ..
+  fi
+
+  if [ ! -e build ]; then
+    mkdir -p build
+  fi
+
   cd build
   cmake ../moab -DENABLE_HDF5=ON \
               -DENABLE_NETCDF=ON \
               -DENABLE_FORTRAN=OFF \
               -DENABLE_BLASLAPACK=OFF \
               -DBUILD_SHARED_LIBS=ON \
-              -DENABLE_PYMOAB=OFF \
+              -DENABLE_PYMOAB=ON \
               -DCMAKE_INSTALL_PREFIX=$HOME/openmc/MOAB
   make -j $ccores
   make install

Ubuntu_22.04/openmc-install.sh

@@ -5,8 +5,8 @@
 set -ex
 
 #nuclear_data_download
-#./nuclear_data-install.sh
-#echo "Downloaded & extracted nuclear data, proceeding..."
+./nuclear_data-install.sh
+echo "Downloaded & extracted nuclear data, proceeding..."
 
 #dagmc compile & install
 ./dagmc-install.sh
@@ -50,12 +50,11 @@ if [ ! -e ${name}.done ]; then
   cd build
   cmake -DOPENMC_USE_DAGMC=ON \
         -DDAGMC_ROOT=$HOME/openmc/DAGMC \
-        -DHDF5_PREFER_PARALLEL=off ..
+        -DHDF5_PREFER_PARALLEL=off \
+        -DCMAKE_INSTALL_PREFIX=$HOME/openmc \
+         ..
   make -j $ccores
-  sudo make install
-
-  cd ..
-  sudo pip3 install .
+  make install
 
   cd ${WD}
 

tests/run-test.sh

@@ -0,0 +1,17 @@
+#! /bin/bash
+
+echo "Running test script..."
+# set the path to the nuclear database
+export OPENMC_CROSS_SECTIONS=$HOME"/openmc/nuclear_data/mcnp_endfb71/cross_sections.xml"
+# set custom version of pyMOAB
+export PYTHONPATH=$PYTHONPATH:$HOME"/openmc/MOAB/build/pymoab/"
+# set custom version of CAD_to_openMC
+export PYTHONPATH=$PYTHONPATH:$HOME"/openmc/CAD_to_openMC/src/"
+# set custom version of OpenMC
+export PYTHONPATH=$PYTHONPATH:$HOME"/openmc/openmc/"
+export PATH=$PATH:$HOME"/openmc/openmc/build/bin/"
+
+if [ ! -e dagmc.h5m ]; then
+    python step_to_h5m.py fuel_pins.step
+fi
+python test_openmc.py

tests/step_to_h5m.py

@@ -0,0 +1,8 @@
+import sys
+import os
+import CAD_to_OpenMC.assembly as ab
+
+a=ab.Assembly()
+a.stp_files=[sys.argv[1]]
+a.import_stp_files()
+a.solids_to_h5m()