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Pull requests: openproblems-bio/task_batch_integration

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Pull requests list

updating the names of the checkpoints
#95 opened Dec 11, 2025 by jkobject Loading…
Added Density-Adaptive BBSG
#94 opened Nov 20, 2025 by stephen-chung-mh Loading…
4 of 8 tasks
Fix revision argument in run_full_local.sh
#91 opened Nov 7, 2025 by lazappi Loading…
2 of 8 tasks
1
Add new method: FADVI
#90 opened Nov 5, 2025 by liuwd15 Loading…
4 of 8 tasks
Add new method: SCA
#89 opened Oct 19, 2025 by schafferde Loading…
4 of 8 tasks
Split Scanorama into two methods, correcting misleading score
#88 opened Oct 19, 2025 by schafferde Loading…
4 of 8 tasks
Scgpt update
#87 opened Oct 13, 2025 by jkobject Loading…
5
Re:PR#58 - Add STACAS as new method component
#85 opened Oct 3, 2025 by JGarnica22 Loading…
4 of 8 tasks
1
Add BBKNN (TS) method.
#84 opened Sep 13, 2025 by cmclean Loading…
4 of 8 tasks
21
Adding new method: ConDo
#83 opened Sep 6, 2025 by calvinmccarter • Draft
2 of 8 tasks
Add limma removebatcheffect
#79 opened Aug 20, 2025 by rcannood Loading…
4 of 8 tasks
2
Add Seurat components
#77 opened Aug 20, 2025 by rcannood Loading…
4 of 8 tasks
16
New metric: ksim
#75 opened Aug 18, 2025 by mumichae Loading…
3 of 8 tasks
6
WIP: Add MLflow models
#73 opened Aug 13, 2025 by lazappi • Draft
1 of 8 tasks
WIP: Experiment with building a Python package
#69 opened Aug 8, 2025 by rcannood • Draft
8 tasks
WIP: Add transcriptformer MLflow model method
#67 opened Jul 9, 2025 by lazappi • Draft
2 of 8 tasks
WIP: Add scgpt_czbenchmarks method
#66 opened Jun 25, 2025 by lazappi • Draft
1 of 8 tasks
1
Adding new method: scMerge2
#63 opened Jun 4, 2025 by seohyonkim Loading…
2 of 8 tasks
24
Add semi-supervised STACAS (ssSTACAS) as new method component
#59 opened Apr 16, 2025 by JGarnica22 Loading…
4 of 8 tasks
15
Update LISI docs
#56 opened Apr 11, 2025 by mumichae Loading…
8 tasks
1
1
Add ComBat-Seq method
#55 opened Mar 19, 2025 by EpigeneMax Loading…
4 of 8 tasks
10
Implementation of CellPLM
#19 opened Dec 14, 2024 by HelloWorldLTY Loading…
2 of 8 tasks
46
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