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    21 repositories

    • data-quality-framework

      Public
      A data quality tool generating reports with differential privacy
      fhirdata-quality-checksdata-qualitybbmrifederated-system
      Java
      •
      GNU General Public License v3.0
      •2•8•20•14•Updated Jan 10, 2026Jan 10, 2026

    • fhir-module

      Public
      A data integration tool for BBMRI-ERIC biobanks.
      fhirdata-integrationbiobankbbmri
      Python
      •
      Apache License 2.0
      •1•3•9•2•Updated Dec 10, 2025Dec 10, 2025

    • data-catalogue-pseudonymisation

      Public
      This is the repository for the pseudonymisation part of the BBMRI.cz data catalog
      Python
      •
      Apache License 2.0
      •1•0•2•0•Updated Nov 3, 2025Nov 3, 2025

    • data-catalogue-organiser

      Public
      This is the repository for the oragnisation part of the BBMRI.cz data catalog.
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Nov 3, 2025Nov 3, 2025

    • data-catalogue-uploader

      Public
      This repository uploads all the sequencing metadata to data.bbmri.cz catalogue
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 27, 2025Oct 27, 2025

    • nis-export-services

      Public
      Python
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • sequencing-services

      Public
      Python
      •0•0•1•0•Updated Sep 17, 2025Sep 17, 2025

    • data-quality-server

      Public
      Central component of the data quality framework
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • bbmri-fhir-gen

      Public
      BBMRI FHIR Test Data Generator
      Go
      •
      Apache License 2.0
      •4•0•0•0•Updated Jun 21, 2025Jun 21, 2025

    • quality-checks

      Public
      Source Code for Quality Checks
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • directory_miabis_on_fhir

      Public
      Transform directory data into MIABIS on FHIR
      Python
      •0•0•0•0•Updated May 20, 2025May 20, 2025

    • MoF-library

      Public
      Python library for working with MIABIS on FHIR profile
      Python
      •
      MIT License
      •0•1•0•0•Updated May 16, 2025May 16, 2025

    • miabis-on-fhir

      Public
      Source Code for the MIABIS on FHIR Implementation Guide
      fhirhl7biobankfhir-igmiabisfhir-im
      GLSL
      •0•1•0•0•Updated May 15, 2025May 15, 2025

    • NGS-data-FAIRification

      Public
      Integration and cataloguing of biobanking and clinical data using FAIR Genomes Metadata Schema.
      Creative Commons Attribution 4.0 International
      •0•0•19•0•Updated Nov 28, 2024Nov 28, 2024

    • data-catalogue-data-retrieval

      Public
      This is the repository for the data retrieval from the BBMRI.cz data catalog.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • mmci-correction

      Public
      repo containing script which corrects coupling of samples to correct collections
      Python
      •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • data-quality

      Public
      This repository contains all materials tied to the Data Quality Framework Project.
      Apache License 2.0
      •1•0•0•1•Updated May 22, 2024May 22, 2024

    • BBM-psedonymization-database

      Public
      Python tools for BBM working with pseudonymization database
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • BBM-export-management

      Public
      This repository contains scritps for db upload, management and API
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • .github

      Public
      0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • bbmri-export

      Public
      This repository contains data description for BIMS export
      biobankbiobanking
      0•0•0•0•Updated Oct 26, 2022Oct 26, 2022