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    24 repositories

    • sSMLM-for-DNA-intrinsic-fluorescence

      Public
      This is the codes for DNA intrinsic fluorescence spectrum extraction based on RainbowSTORM
      Jupyter Notebook
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • SMLM-SREV

      Public
      Fortran
      •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • RM-FDTD-PWS

      Public
      0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • csPWS

      Public
      chromatin sensitive PWS project. Goal is to detect subnuclear changes in chromatin on PWS images on both in vitro/in vivo samples.
      Jupyter Notebook
      •0•0•0•0•Updated May 2, 2025May 2, 2025

    • CDA_Paper

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • OCSC-Transcription-Paper

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • 3D-FISH-Paper

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • Transcription

      Public
      A repository for the Transcription project
      R
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • Cut-Tag

      Public
      A repository to hold code for Backman Lab Cut&Tag data analysis
      Shell
      •0•2•0•0•Updated Sep 19, 2024Sep 19, 2024

    • EU-seq

      Public
      Shell
      •0•0•0•0•Updated Sep 7, 2024Sep 7, 2024

    • RAD21

      Public
      Mathematica
      •0•1•0•0•Updated Aug 29, 2024Aug 29, 2024

    • Lamin-Project

      Public
      Repository for Lamin B Project Analysis
      Jupyter Notebook
      •0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • PWSpy

      Public
      A Python library dedicated to the analysis of Partial Wave Microscopy (PWS) data.
      Python
      •
      GNU General Public License v3.0
      •3•4•1•0•Updated Dec 8, 2023Dec 8, 2023

    • PWSMicroManager

      Public
      A fork of the popular Micro-Manager open-source application tailored to the acquisition of Partial Wave Spectroscopic Microscopy data.
      Java
      •2•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • pwspy_gui

      Public
      A collection of GUIs providing users with easy access to PWS data analysis.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • Nucleus-D-Segmentation

      Public
      MATLAB code for segmenting nuclei by 7 classes of packing density.
      MATLAB
      •1•0•0•0•Updated Jan 28, 2022Jan 28, 2022

    • CoregisterUtility

      Public
      A python program wrapping an imageJ plugin for opencv/interactive image coregistration.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 20, 2021Dec 20, 2021

    • BackmanLab.github.io

      Public
      0•0•0•0•Updated Oct 18, 2021Oct 18, 2021

    • AngoraFDTD

      Public
      C++
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • NA-Detector

      Public
      Python
      •1•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • mmPWSPlugin

      Public
      A plugin for Micro-Manager for automated acquisition of Partial Wave Spectroscopic Microscopy data.
      Java
      •1•0•0•0•Updated Sep 23, 2021Sep 23, 2021

    • Cell-Coverage

      Public
      Python
      •1•0•0•0•Updated Aug 25, 2021Aug 25, 2021

    • AutoROI

      Public
      Python
      •1•0•0•0•Updated Aug 25, 2021Aug 25, 2021

    • PWSCalibrationSuite

      Public
      Python
      •1•0•0•0•Updated Aug 13, 2021Aug 13, 2021