Repositories list

• hmseekr

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

• hmseekr_manuscript

  Public
  0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

• AKX_HNRNPU_manuscript

  Public
  codes for Modular protein-RNA associations reveal a requirement for HNRNPU in long-range Polycomb recruitment by the lncRNAs Airn, Kcnq1ot1, and Xist

  HTML

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  MIT License

  •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

• Protocol-for-evaluating-RNA-protein-associations-in-mammalian-cells-with-RIP-seq-and-RIP-qPCR

  Public
  codes for the manuscript: Protocol for evaluating RNA-protein associations in mammalian cells with RIP-seq and RIP-qPCR

  Shell

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  MIT License

  •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

• seekr2.0_update_manuscript

  Public
  Shell

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  MIT License

  •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

• hmseekr0.5

  Public
  Python

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  MIT License

  •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

• Pipelines

  Public
  Shell

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• Airn_Xist_manuscript

  Public
  codes for figures and tables for "Protein-bridged recruitment of Polycomb repressive complexes by the lncRNAs Airn and Xist"

  Jupyter Notebook

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  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• seekr

  Public
  A library for counting small kmer frequencies in nucleotide sequences.

  Python

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  MIT License

  •14•27•9•1•Updated Oct 29, 2024Oct 29, 2024

• seekr_web

  Public
  Python

  •0•0•0•0•Updated Apr 3, 2019Apr 3, 2019

• protocols

  Public
  Protocol documents detailing how to run experiments or manage infrastructure.

  0•0•0•0•Updated Apr 3, 2019Apr 3, 2019