Search results

ArrayIndexOutOfBoundsException when running caseControl command in SnpSift

Status: Open.

#94 In pcingola/SnpSift;

· sofiapagani123 opened on Aug 1, 2025

Incorrect filtering with !(ANN[*].ERRORs in SET[0])

Status: Open.

#93 In pcingola/SnpSift;

· dpryan79 opened on Apr 16, 2025

Missing usage documentation on gtfilter

Status: Open.

#88 In pcingola/SnpSift;

· IdoBar opened on Jun 17, 2024

can snpsift rename the INFO/TAG？

Status: Open.

#87 In pcingola/SnpSift;

· litun-fkby opened on Feb 27, 2024

Adding alphamissense and other annotations from the latest dbNSFP

Status: Open.

#86 In pcingola/SnpSift;

· ramirobarrantes opened on Dec 6, 2023

how to filter based on FREQ?

Status: Open.

#83 In pcingola/SnpSift;

· chunxuan-hs opened on Jul 24, 2023

extract "ANN[*].RANK" from the ANN field

Status: Open.

#82 In pcingola/SnpSift;

· gcy0115 opened on Feb 15, 2023

SnpSift split outputs only the first chromosome

Status: Open.

#81 In pcingola/SnpSift;

· kmavrommatis opened on Dec 16, 2022

CNV error

Status: Open.

#78 In pcingola/SnpSift;

· weichenyangs opened on Nov 24, 2022

Filtering variants with a supporting read in the normal sample

Status: Open.

#76 In pcingola/SnpSift;

· yoakiyama opened on Jul 29, 2022

annotate parameters

Status: Open.

#74 In pcingola/SnpSift;

· lmanchon opened on Jul 5, 2022

How to deal with conflicting INFO field names

Status: Open.

#73 In pcingola/SnpSift;

· rhdolin opened on Jul 4, 2022