Removed old numpy dependency

.github/workflows/lint-and-test.yml

@@ -9,6 +9,9 @@ on:
 jobs:
   lint-and-test:
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
 
     steps:
     - name: Check out code
@@ -19,8 +22,8 @@ jobs:
       with:
         version: "latest"
 
-    - name: Set up Python
-      run: uv python install
+    - name: Set up Python ${{ matrix.python-version }}
+      run: uv python install ${{ matrix.python-version }}
 
     - name: Install dependencies
       run: |

.gitignore

@@ -16,4 +16,5 @@ __pycache__
 
 # tests
 /tests/test_data
-.venv
+.venv
+coverage.xml

pyproject.toml

@@ -7,12 +7,12 @@ authors = [
 ]
 readme = "README.md"
 license = { text = "Apache-2.0" }
-requires-python = ">=3.10,<4.0"
+requires-python = ">=3.10,<3.14"
 dependencies = [
     "matplotlib>=3.8.2",
     "trimesh>=4.0.5",
-    "nibabel==5.2.1",
-    "numpy==1.26.4",
+    "nibabel>=5.2.1",
+    "numpy>=1.26.4",
     "pillow>=11.0.0",
     "pydicom>=3.0.1",
     "simpleitk>=2.4.0",

radstract/datasets/utils.py

@@ -15,15 +15,15 @@
 import logging
 import os
 from collections import defaultdict
-from multiprocessing import Lock, Manager, Pool
+from multiprocessing import Pool
 from typing import Dict, List, Optional, Tuple, Union
 
 import numpy as np
 import pydicom
 from PIL import Image
+
 from radstract.data.colors import change_color
 from radstract.data.dicom import DicomTypes, convert_dicom_to_images
-from radstract.data.multimodal import remove_black_frames
 from radstract.data.nifti import convert_nifti_to_image_labels